Here are your Star Wars book recommendations for cloning:
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Episode II: Attack of the Clones novelization

Episode II: Attack of the Clones novelization by R.A. Salvatore
This is the official adaptation of the Episode II: Attack of the Clones film, with a number of expanded and new scenes that build upon the story from the movie.

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This is a movie novelization from the Legends timeline. Though the movie itself is canon, original content in the book could be contradicted by future books, movies, or TV shows (if so, you can think of it as an alternate universe).

The Cestus Deception

The Cestus Deception by Steven Barnes
A story about the height of the Clone Wars, the struggle of the Jedi to hold back the separatists, and the moral questions raised in a galaxy at war. The story follows Jedi Masters Obi-Wan Kenobi and Kit Fisto and the complement of clone troopers serving them as they fight to keep the Separatists from unleashing a new weapon on the galaxy.

Count Dooku does not appear in the novel, even though his face is on the cover.

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This is a prequel era book from the Legends timeline. It may be contradicted by newer books, movies, or TV shows (if so, just think of it as an alternate universe).

Republic Commando 1-3

The Republic Commando series (parts 1-3) by Karen Traviss
Originally commissioned as a tie-in to the Republic Commando video game, author Karen Traviss's writing was so highly praised its vivid characters and realistic treatment of military life that the story was continued in a popular series. The story follows the life of several clonetrooper commandos during the Clone Wars, delving deeply into their identity as cloned soldiers, as well as their sometimes lackluster relationships with the Jedi and others. Packed with lots of military action.


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Book 1: Hard Contact
Book 2: Triple Zero
Book 3: True Colors

Story continued in Order 66: A Republic Commando Novel.

This is a prequel era series from the Legends timeline. It may be contradicted by newer books, movies, or TV shows (if so, just think of it as an alternate universe).  

Order 66: A Republic Commando Novel

Order 66: A Republic Commando Novel by Karen Traviss
In the final novel of the Clone Wars Republic Commando series, the clone commandos become caught up in Palpatine's scheme to destroy the Jedi, who have been their allies throughout the war. The story overlaps with Episode III: Revenge of the Sith.

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Story continued in Imperial Commando: 501st

This is a prequel era book from the Legends timeline. It may be contradicted by newer books, movies, or TV shows (if so, just think of it as an alternate universe). 

Imperial Commando: 501st

Imperial Commando: 501st by Karen Traviss
The first book of an unfinished follow-up series to the beloved Republic Commando novels, 501st continues the story of those books into the early days of the Empire, when the clone commando squads are drafted into Darth Vader's special stormtrooper legion.

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This is a classic era book from the Legends timeline. It will likely be contradicted by newer books, movies, or TV shows (if so, just think of it as an alternate universe).

The Force Unleashed I & II

The Force Unleashed I & II by Sean Williams
Based on the popular video games Star Wars: The Force Unleashed and The Force Unleashed II, these novels tell the story of a powerful Force user, trained as Darth Vader's apprentice, who becomes entangled in the founding of the Rebel Alliance.

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The Force Unleashed
The Force Unleashed II

This is a classic era book from the Legends timeline. It will likely be contradicted by newer books, movies, or TV shows (if so, just think of it as an alternate universe).

The Thrawn Trilogy


The Thrawn Trilogy by Timothy Zahn
Among the most beloved of all Star Wars novels, the so-called Thrawn Trilogy (a name that doesn't actually appear on the books themselves) was the story that launched the Legends expanded universe in earnest back in 1991. These books were the first ever written to take place after Return of the Jedi, and they set the stage for much of the rest of the Legends continuity. They tell a masterfully-written, multi-faceted story that's at once both epic and deeply personal.

Five years after the destruction of the second Death Star, the budding New Republic is threatened by Grand Admiral Thrawn, an alien military genius who has returned from the Unknown Regions to retake the galaxy for the Empire. Worse, Thrawn teams up with an insane Jedi clone who boasts access to secret Imperial technologies. Luke Skywalker, Han Solo, and Princess Leia must rediscover old secrets and search out new allies in the struggle to stop Thrawn. But among these new "friends" is Mara Jade, a former Imperial agent who lives for one purpose: to kill Luke Skywalker.

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Book 1: Heir to the Empire
Book 2: Dark Force Rising
Book 3: The Last Command

This is a post-Return of the Jedi series from the Legends timeline. Think of it as an alternate universe from The Force Awakens and newer books.

The Hand of Thrawn

The Hand of Thrawn duology by Timothy Zahn
The thrilling follow-up to Timothy Zahn's beloved Thrawn Trilogy! Ten years after Grand Admiral Thrawn nearly brought the New Republic to its knees, the Imperial Remnant is ready to finally surrender to the former rebels. Not everyone would have peace: Three well-placed Imperials conspire to fake the resurrection of Thrawn, not realizing how close to the truth they really are. Luke Skywalker and Mara Jade follow a mysterious trail of clues to a shocking discovery the Unknown Regions, while a revelation from the past threatens to tear the New Republic apart from the inside.

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Book 1: Specter of the Past
Book 2: Vision of the Future

This is a post-Return of the Jedi series from the Legends timeline. Think of it as an alternate universe from The Force Awakens and newer books.

Crosscurent & Riptide

Crosscurrent & Riptide by Paul S. Kemp
Two junk salvagers team up with a Jedi knight for an adventure that turns out to be much more than they bargained for, with danger around every turn, and dark mysteries lying in wait. Meanwhile, an ancient Jedi and Sith caught in a hyperspace time warp are on a collision course with all the action. Rollicking adventures starring a mostly new and endearing (but inexplicably all-male) cast of characters.

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Crosscurrent
Riptide

These are post-Return of the Jedi novels from the Legends timeline. Think of it as an alternate universe from the sequel movies and newer books.